16.7: Sequence Alignment and Tree Building
( \newcommand{\kernel}{\mathrm{null}\,}\)
Command Line
The following requires:
- A UNIX-like environment like Linux or MacOS
- MUSCLE to perform a multiple sequence alignment
- PhyML to generate Maximum Likelihood
- FigTree to manipulate the tree
Download the example file oranges. In the download directory, perform the following:
1 2 3 4 5 6 7 8 9 |
|