16.7: Sequence Alignment and Tree Building
- Page ID
- 24921
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The following video illustrates the tree-building process using MUSCLE and PhyML in UGENE.
Command Line
The following requires:
- A UNIX-like environment like Linux or MacOS
- MUSCLE to perform a multiple sequence alignment
- PhyML to generate Maximum Likelihood
- FigTree to manipulate the tree
Download the example file oranges. In the download directory, perform the following:
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