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Biology LibreTexts

Computational analysis

  1. Koike, Kana, Kazutomo Kawaguchi, and Takahisa Yamato. "Stress tensor analysis of the protein quake of photoactive yellow protein." Physical Chemistry Chemical Physics 10, no. 10 (2008): 1400-1405. pdf (checked)
  2. Yamada, Atsushi, Takakazu Ishikura, and Takahisa Yamato. "Direct measure of functional importance visualized atom‐by‐atom for photoactive yellow protein: Application to photoisomerization reaction." Proteins: Structure, Function, and Bioinformatics 55, no. 4 (2004): 1070-1077. pdf (checked)
  3. Yu, Xin, and David M. Leitner. "Chromophore vibrations during isomerization of photoactive yellow protein: analysis of normal modes and energy transfer." Chemical physics letters 391, no. 1 (2004): 181-186. pdf (checked)