SBML_BiBiPingPongChymo_CovInterm
- Page ID
- 130329
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MODEL
BiBi-Ping Pong_Covalent Intermediate Irreversible reaction
Vcell reaction diagram (1-way arrows defined as reversible in actual mathematical model) and chemical equation
Yellow dots: Reaction Nodes (R1, R2 and R3 left to right)
Reaction made irreversible since kr2 = 0, kr3 = 0.
Initial parameter values:
- S0 = 100, E0 = 1, W (water in a hydrolysis reaction) = 50 and fixed throughout
- k1f = 5, k1r = 1, k2f = 0.6,
- k2f = 50, k2r = 0
- k3f = 0.05, k3f = 0
Select Load [model name] below
Select Start to begin the simulation.
Select Plot to change Y axis min/max, then Reset and Play | Select Slider to change which constants are displayed | Select About for software information.
To see the burst phase for reaction, change the time and parameters to these values:
- set Run time to 0.3
- Select Plot then Update Y axis max to 2
- Click Edit Plot Species and check just P and Q
- reset
Time course model made using Virtual Cell (Vcell), The Center for Cell Analysis & Modeling, at UConn Health. Funded by NIH/NIGMS (R24 GM137787); Web simulation software (miniSidewinder) from Bartholomew Jardine and Herbert M. Sauro, University of Washington. Funded by NIH/NIGMS (RO1-GM123032-04)