2.7: Tools and Techniques
- Page ID
- 40917
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Lalign finds local alignments between two sequences. Dotlet is a browser-based Java applet for visualizing the alignment of two sequences in a dot-matrix.
The following tools are available for multiple sequence alignment:
- Clustal Omega - A multiple sequence alignment program that uses seeded guide trees and HMM
profile-profile techniques to generate alignments.[10]
- MUSCLE - MUltiple Sequence Comparison by Log-Expectation[3]
- T-Coffee - Allows you to combine results obtained with several alignment methods[2]
- MAFFT - (Multiple Alignment using Fast Fourier Transform) is a high speed multiple sequence align- ment program[5]
- Kalign - A fast and accurate multiple sequence alignment algorithm[9]