Skip to main content
Biology LibreTexts

Bibliography

  • Page ID
    41402
  • \( \newcommand{\vecs}[1]{\overset { \scriptstyle \rightharpoonup} {\mathbf{#1}} } \)

    \( \newcommand{\vecd}[1]{\overset{-\!-\!\rightharpoonup}{\vphantom{a}\smash {#1}}} \)

    \( \newcommand{\id}{\mathrm{id}}\) \( \newcommand{\Span}{\mathrm{span}}\)

    ( \newcommand{\kernel}{\mathrm{null}\,}\) \( \newcommand{\range}{\mathrm{range}\,}\)

    \( \newcommand{\RealPart}{\mathrm{Re}}\) \( \newcommand{\ImaginaryPart}{\mathrm{Im}}\)

    \( \newcommand{\Argument}{\mathrm{Arg}}\) \( \newcommand{\norm}[1]{\| #1 \|}\)

    \( \newcommand{\inner}[2]{\langle #1, #2 \rangle}\)

    \( \newcommand{\Span}{\mathrm{span}}\)

    \( \newcommand{\id}{\mathrm{id}}\)

    \( \newcommand{\Span}{\mathrm{span}}\)

    \( \newcommand{\kernel}{\mathrm{null}\,}\)

    \( \newcommand{\range}{\mathrm{range}\,}\)

    \( \newcommand{\RealPart}{\mathrm{Re}}\)

    \( \newcommand{\ImaginaryPart}{\mathrm{Im}}\)

    \( \newcommand{\Argument}{\mathrm{Arg}}\)

    \( \newcommand{\norm}[1]{\| #1 \|}\)

    \( \newcommand{\inner}[2]{\langle #1, #2 \rangle}\)

    \( \newcommand{\Span}{\mathrm{span}}\) \( \newcommand{\AA}{\unicode[.8,0]{x212B}}\)

    \( \newcommand{\vectorA}[1]{\vec{#1}}      % arrow\)

    \( \newcommand{\vectorAt}[1]{\vec{\text{#1}}}      % arrow\)

    \( \newcommand{\vectorB}[1]{\overset { \scriptstyle \rightharpoonup} {\mathbf{#1}} } \)

    \( \newcommand{\vectorC}[1]{\textbf{#1}} \)

    \( \newcommand{\vectorD}[1]{\overrightarrow{#1}} \)

    \( \newcommand{\vectorDt}[1]{\overrightarrow{\text{#1}}} \)

    \( \newcommand{\vectE}[1]{\overset{-\!-\!\rightharpoonup}{\vphantom{a}\smash{\mathbf {#1}}}} \)

    \( \newcommand{\vecs}[1]{\overset { \scriptstyle \rightharpoonup} {\mathbf{#1}} } \)

    \( \newcommand{\vecd}[1]{\overset{-\!-\!\rightharpoonup}{\vphantom{a}\smash {#1}}} \)

    [1] O. Akerborg, B. Sennblad, L. Arvestad, and J. Lagergren. Bayesian gene tree reconstruction and recon- ciliation analysis. Proc Natl Acad Sci, 106(14):5714–5719, Apr 2009.

    [2] Zmasek C.M. and Eddy S.R. Analyzing proteomes by automated phylogenomics using resampled infer- ence of orthologs. BMC Bioinformatics, 3(14), 2002.

    [3] Li H, Coghlan A, Ruan J, Coin LJ, Heriche JK, Osmotherly L, Li R, Liu T, Zhang Z, Bolund L, Wong GK, Zheng W, DEhal P, Wang J, and Durbin R. Treefam: a curated database of phylogenetic trees of animal gene families. Nucleic Acids Res, 34, 2006.

    [4] Arvestad L., Berglund A., Lagergren J., and Sennblad B. Bayesian gene/species tree reconciliation and orthology analysis using mcmc. Bioinformatics, 19 Suppl 1, 2003.

    [5] M. D. Rasmussen and M. Kellis. A bayesian approach for fast and accurate gene tree reconstruction. Mol Biol Evol, 28(1):273290, Jan 2011.

    [6] Matthew D. Rasmussen and Manolis Kellis. Accurate gene-tree reconstruction by learning gene and species-specific substitution rates across multiple complete genomes. Genome Res, 17(12):1932–1942, Dec 2007.

    [7] C.E.V. Storm and E.L.L. Sonnhammer. Automated ortholog inference from phylogenetic trees and calculation of orthology reliability. Bioinformatics, 18(1):92–99, Jan 2002.

    [8] Hollich V., Milchert L., Arvestad L., and Sonnhammer E. Assessment of protein distance measures and tree-building methods for phylogenetic tree reconstruction. Mol Biol Evol, 22:2257–2264, 2005.

    [9] Wapinski, I. A. Pfeffer, N. Friedman, and A. Regev. Automatic genome-wide reconstruction of phyloge- netic gene trees. Bioinformatics, 23(13):i549–i558, 2007.


    Bibliography is shared under a not declared license and was authored, remixed, and/or curated by LibreTexts.

    • Was this article helpful?