25.4: 26.4 References
- Page ID
- 38863
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- Parker, N., Schneegurt, M., Thi Tu, A-H., Lister, P., Forster, B.M. (2019) Microbiology. Openstax. Available at: https://opentextbc.ca/microbiologyopenstax/
- Palazzo, A., and Lee, E.S. (2015) Non-coding RNA: what is function and what is junk? Frontiers in Genetics 6:2 Available at: file:///C:/Users/flatt/AppData/Local/Temp/fgene-06-00002.pdf
- Wikipedia contributors. (2020, July 9). RNA. In Wikipedia, The Free Encyclopedia. Retrieved 15:30, August 6, 2020, from https://en.Wikipedia.org/w/index.php?title=RNA&oldid=966784317
- Burenina, O.Y., Oretskaya, T.S., and Kubareva, E.A. (2017) Non-Coding RNAs As Transcriptional Regulators in Eukaryotes. Acta Naturae 9(4):13-25. Available at: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5762824/
- Khatter, H., Vorlander, M.K., and Muller C.W. (2017) RNA polymerase I and III: similar yet unique. Current Opinion in Structural Biology 47:88-94. Available at: https://www.sciencedirect.com/science/article/pii/S0959440X17300313
- Wikipedia contributors. (2020, May 8). Sigma factor. In Wikipedia, The Free Encyclopedia. Retrieved 17:50, August 7, 2020, from https://en.Wikipedia.org/w/index.php?title=Sigma_factor&oldid=955570499
- Bae, B., Felkistov, A., Lass-Napiokowska, A., Landick, R., and Darst, S.A. (2015) Structure of a bacterial RNA polymerase holoenzyme open protomer complex. eLife 4:e08504. Available at: https://elifesciences.org/articles/08504
- Petrenko, N., Jin, Y., Dong, L., Wong, K.H., and Struhl, K. (2019) Requirements for RNA polymerase II preinitiation complex formation in vivo. eLife 8:e43654. Available at: https://elifesciences.org/articles/43654
- Gupta, K., Sari-Ak, D., Haffke, M., Trowitzsch, S., and Berger, I. (2016) Zooming in on transcription preinitiation. J Mol Biol. 428(12):2581-2591. Available at: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4906157/
- Wikipedia contributors. (2020, April 17). TATA-binding protein. In Wikipedia, The Free Encyclopedia. Retrieved 14:54, August 8, 2020, from https://en.Wikipedia.org/w/index.php?title=TATA-binding_protein&oldid=951583592
- Patel, A.B., Greber, B.J., and Nogales, E. (2020) Recent insights into the structure of TFIID, its assembly, and its binding to core promoter. Curr Op Struct Bio 61:17-24. Available at: https://www.sciencedirect.com/science/article/pii/S0959440X19301113#fig0010
- Ruff, E.F., Record, Jr., M.T., Artsimovitch, I., (2015) Initial events in bacterial transcription initiation. Biomolecules 5(2):1035-1062. Available at: https://www.mdpi.com/2218-273X/5/2/1035/htm
- Kireeva, M., Opron, K., Seibold, S., Domecq, C., Cukier, R.I., Coulombe, B., Kashlev, M., and Burton, Z. (2102) Molecular dynamics and mutational analysis of the catalytic and translocation cycle of RNA polymerase. BMC Biophysics 5(1):11. Available at: https://www.researchgate.net/publication/225281979_Molecular_dynamics_and_mutational_analysis_of_the_catalytic_and_translocation_cycle_of_RNA_polymerase/figures?lo=1
- Washburn, R.S., and Gottesman, M.E. (2015) Regulation of transcription elongation and termination. Biomolecules 5(2):1063-1078. Available at: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4496710/pdf/biomolecules-05-01063.pdf
- Zenkin, N., and Yuzenkova, Y. (2015) New insights into the functions of transcription factors that bind the RNA polymerase secondary channel. Biomolecules 5(3):1195-1209. Available at: https://www.mdpi.com/2218-273X/5/3/1195/htm
- Gocheva, V., LeGall, A., Boudvillain, M., Margeat, E., and Nollmann, M. (2015) Direct observation of the translocation mechanism of transcription termination factor Rho. Nuc Acids Res 43(1):10.1093. Available at: https://www.researchgate.net/publication/272162172_Direct_observation_of_the_translocation_mechanism_of_transcription_termination_factor_Rho
- Miki, T.S., Carl, S.H., and Groβhans, H. (2017) Two disctinct transcription termination modes dictated by promoters. Genes & Dev 31:1-10. Available at: https://www.researchgate.net/publication/320350041_Two_distinct_transcription_termination_modes_dictated_by_promoters
- Gurumurthy, A., Shen, Y., Gunn, E.M., Bungert, J. (2018) Phase separation and transcription regulation: Are Super-Enhancers and Locus Control Regions primary sites of transcription complex assembly? BioEssays 1800164. Available at: https://www.researchgate.net/publication/329331157_Phase_Separation_and_Transcription_Regulation_Are_Super-Enhancers_and_Locus_Control_Regions_Primary_Sites_of_Transcription_Complex_Assembly
- Suñé-Pou, M., Prieto-Sánchez, Boyero-Corral, S., Moreno-Castro, C., El Yousfi, Y., Suñé-Negre, J.M., Hernández-Munain, C., and Suñé, C. (2017) Targeting splicing in the treatment of human disease. Genes 8(3):87. Available at: https://www.mdpi.com/2073-4425/8/3/87/htm
- Schaughency, P., Merran, J., and Corden J.L. (2014) Genome-wide mapping of yeast RNA polymerase II termination. PLOS Genetics 10(10):e1004632 Available at: https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1004632
- Nourse, J., Spada, S., and Danckwardt, S. (2020) Emerging roles of RNA 3'-end cleavage and polyadenylation in pathogenesis, diagnosis, and therapy of human disorders. Biomolecules 10(6):915. Available at: https://www.mdpi.com/2218-273X/10/6/915/htm
- Wikipedia contributors. (2020, July 30). Five-prime cap. In Wikipedia, The Free Encyclopedia. Retrieved 05:53, August 11, 2020, from https://en.Wikipedia.org/w/index.php?title=Five-prime_cap&oldid=970240533
- Cortes, T. and Cox, R.A. (2015) Transcription and translation of the rpsJ, rplN and rRNA operons of the tubercle bacillus. Microbiology (2015) 161:719-728. Available at: https://www.microbiologyresearch.org/docserver/fulltext/micro/161/4/719_mic000037.pdf?expires=1597159574&id=id&accname=guest&checksum=6FFC9C066EF41C7799FAE843CE94C49F
- Hein, P.P. and Landick, R. (2010) The bridge helix coordinates movements of modules in RNA polymerase. BMC Biology 8:141. Available at: https://bmcbiol.biomedcentral.com/articles/10.1186/1741-7007-8-141
- Gonatopoulos-Pournatzis, T., and Cowling, V.H. (2014) Cap-binding complex (CBC). Biochem. J. 457:231-242. Available at: https://www.researchgate.net/publication/259392894_Cap-binding_complex_CBC