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Biology LibreTexts

WT: Hh-PYP

  1. Kort, R., H. Vonk, X. Xu, W. D. Hoff, W. Crielaard, and K. J. Hellingwerf. "Evidence for trans‐cis isomerization of the p‐coumaric acid chromophore as the photochemical basis of the photocycle of photoactive yellow protein."FEBS letters 382, no. 1-2 (1996): 73-78. pdf (checked)
  2. Carroll, Elizabeth C., Marijke Hospes, Carmen Valladares, Klaas J. Hellingwerf, and Delmar S. Larsen. "Is the photoactive yellow protein a UV-B/blue light photoreceptor?." Photochemical & Photobiological Sciences 10, no. 4 (2011): 464-468. pdf (checked)
  3. Nakamura, Ryosuke, and Norio Hamada. "Vibrational Energy Flow in Photoactive Yellow Protein Revealed by Infrared Pump–Visible Probe Spectroscopy." The Journal of Physical Chemistry B 119, no. 19 (2015): 5957-5961. pdf (checked)
  4. Chosrowjan, Haik, Seiji Taniguchi, and Fumio Tanaka. "Ultrafast fluorescence upconversion technique and its applications to proteins." FEBS journal 282, no. 16 (2015): 3003-3015. pdf (checked)
  5. Zhu, Jingyi, Laura Paparelli, Marijke Hospes, Jos Arents, Klaas Hellingwerf, John TM Kennis, Ivo HM van Stokkum, and Marie Louise Groot. "Ultrafast geminate electron-radical recombination dynamics in photoactive yellow protein." In EPJ Web of Conferences, vol. 41, p. 07010. EDP Sciences, 2013. pd(checked)
  6. Nakamura, R., N. Hamada, K. Abe, and M. Yoshizawa. "Structural Evolution in Photoactive Yellow Protein Studied by Femtosecond Stimulated Raman Spectroscopy." In EPJ Web of Conferences, vol. 41, p. 07008. EDP Sciences, 2013. pdf (checked)
  7. Liu, Jun, Atsushi Yabushita, Seiji Taniguchi, Haik Chosrowjan, Yasushi Imamoto, Keiichi Sueda, Noriaki Miyanaga, and Takayoshi Kobayashi. "Ultrafast Time-Resolved Pump–Probe Spectroscopy of PYP by a Sub-8 fs Pulse Laser at 400 nm." The Journal of Physical Chemistry B 117, no. 17 (2013): 4818-4826. pdf (checked)
  8. Zhu, Jingyi, Laura Paparelli, Marijke Hospes, Jos Arents, John TM Kennis, Ivo HM van Stokkum, Klaas J. Hellingwerf, and Marie Louise Groot. "Photoionization and electron radical recombination dynamics in photoactive yellow protein investigated by ultrafast spectroscopy in the visible and near-infrared spectral region." The Journal of Physical Chemistry B 117, no. 38 (2013): 11042-11048. pdf (A correction has been issued for this paper, pdf(checked)
  9. Rupenyan, Alisa B., Jocelyne Vreede, Ivo HM van Stokkum, Marijke Hospes, John TM Kennis, Klaas J. Hellingwerf, and Marie Louise Groot. "Proline 68 enhances photoisomerization yield in photoactive yellow protein."The Journal of Physical Chemistry B 115, no. 20 (2011): 6668-6677.. pdf (checked)
  10. Nakamura, Ryosuke, Norio Hamada, Kenta Abe, and Masayuki Yoshizawa. "Ultrafast hydrogen-bonding dynamics in the electronic excited state of photoactive yellow protein revealed by femtosecond stimulated Raman spectroscopy." The Journal of Physical Chemistry B 116, no. 51 (2012): 14768-14775. pdf (checked)
  11. Liu, Jun, Kotaro Okamura, Yuichiro Kida, Takahiro Teramoto, and Takayoshi Kobayashi. "Clean sub-8-fs pulses at 400 nm generated by a hollow fiber compressor for ultraviolet ultrafast pump-probe spectroscopy." Optics express 18, no. 20 (2010): 20645-20650. pdf (checked)
  12. Nakamura, Ryosuke, Norio Hamada, Hideki Ichida, Fumio Tokunaga, and Yasuo Kanematsu. "Transient vibronic structure in ultrafast fluorescence spectra of photoactive yellow protein." Photochemistry and photobiology 84, no. 4 (2008): 937-940. pdf (checked)
  13. Nakamura, Ryosuke, Norio Hamada, Hideki Ichida, Fumio Tokunaga, and Yasuo Kanematsu. "Coherent oscillations in ultrafast fluorescence of photoactive yellow protein." The Journal of chemical physics 127, no. 21 (2007): 215102. pdf (checked)
  14. Nakamura, Ryosuke, Norio Hamada, Hideki Ichida, Fumio Tokunaga, and Yasuo Kanematsu. "Ultrafast dynamics of photoactive yellow protein via the photoexcitation and emission processes." Photochemistry and photobiology83, no. 2 (2007): 397-402. pdf (checked)
  15. Van Wilderen, L. J. G. W., M. A. Van der Horst, I. H. M. Van Stokkum, K. J. Hellingwerf, R. Van Grondelle, and M. L. Groot. "Ultrafast infrared spectroscopy reveals a key step for successful entry into the photocycle for photoactive yellow protein." Proceedings of the National Academy of Sciences 103, no. 41 (2006): 15050-15055. pdf (checked)
  16. Heyne, Karsten, Omar F. Mohammed, Anwar Usman, Jens Dreyer, Erik TJ Nibbering, and Michael A. Cusanovich. "Structural evolution of the chromophore in the primary stages of trans/cis isomerization in photoactive yellow protein." Journal of the American Chemical Society 127, no. 51 (2005): 18100-18106. pdf (checked)
  17. Larsen, Delmar S., Ivo HM van Stokkum, Mikas Vengris, Michael A. van der Horst, Frank L. de Weerd, Klaas J. Hellingwerf, and Rienk van Grondelle. "Incoherent manipulation of the photoactive yellow protein photocycle with dispersed pump-dump-probe spectroscopy." Biophysical journal 87, no. 3 (2004): 1858-1872. pdf (checked)
  18. Chosrowjan, Haik, Noboru MATAGA, Seiji TANIGUCHI, Masashi UNNO, Hironari KAMIKUBO, Yasushi IMAMOTO, and Mikio KATAOKA. "Time and Frequency Domain Investigations on Ultrafast Photoreaction Dynamics of Photoactive Yellow Protein (PYP)." The Review of Laser Engineering 32, no. 2 (2004): 114-120. pdf (checked)
  19. Chosrowjan, Haik, Seiji Taniguchi, Noboru Mataga, Masashi Unno, Seigo Yamauchi, Norio Hamada, Masato Kumauchi, and Fumio Tokunaga. "Low-frequency vibrations and their role in ultrafast photoisomerization reaction dynamics of photoactive yellow protein." The Journal of Physical Chemistry B 108, no. 8 (2004): 2686-2698. pdf (checked)
  20. Mataga, Noboru, Haik Chosrowjan, Seiji Taniguchi, Norio Hamada, Fumio Tokunaga, Yasushi Imamoto, and Mikio Kataoka. "Ultrafast photoreactions in protein nanospaces as revealed by fs fluorescence dynamics measurements on photoactive yellow protein and related systems." Physical Chemistry Chemical Physics 5, no. 11 (2003): 2454-2460. pdf (checked)
  21. Mataga, Noboru, Haik Chosrowjan, Yutaka Shibata, Yasushi Imamoto, Mikio Kataoka, and Fumio Tokunaga. "Ultrafast photoinduced reaction dynamics of photoactive yellow protein (PYP): observation of coherent oscillations in the femtosecond fluorescence decay dynamics." Chemical physics letters 352, no. 3 (2002): 220-225. pdf (checked)
  22. Hanada, H., Y. Kanematsu, S. Kinoshita, M. Kumauchi, J. Sasaki, and F. Tokunaga. "Ultrafast fluorescence spectroscopy of photoactive yellow protein." Journal of luminescence 94 (2001): 593-596. pdf (checked)
  23. Mataga, Noboru, Haik Chosrowjan, Yutaka Shibata, Yasushi Imamoto, and Fumio Tokunaga. "Effects of modification of protein nanospace structure and change of temperature on the femtosecond to picosecond fluorescence dynamics of photoactive yellow protein." The Journal of Physical Chemistry B 104, no. 21 (2000): 5191-5199. pdf (checked)
  24. Chosrowjan, Haik, Noboru Mataga, Yutaka Shibata, Yasushi Imamoto, and Fumio Tokunaga. "Environmental effects on the femtosecond-picosecond fluorescence dynamics of photoactive yellow protein: chromophores in aqueous solutions and in protein nanospaces modified by site-directed mutagenesis." The Journal of Physical Chemistry B 102, no. 40 (1998): 7695-7698. pdf (checked)
  25. Kennis, John TM, and Marie-Louise Groot. "Ultrafast spectroscopy of biological photoreceptors." Current opinion in structural biology 17, no. 5 (2007): 623-630. pdf (checked)
  26. Mataga, Noboru, Haik Chosrowjan, and Seiji Taniguchi. "Investigations into the dynamics and mechanisms of ultrafast photoinduced reactions taking place in photoresponsive protein nanospaces (PNS)." Journal of Photochemistry and Photobiology C: Photochemistry Reviews 5, no. 2 (2004): 155-168. pdf (checked)
  27. van Stokkum, Ivo HM, Delmar S. Larsen, and Rienk van Grondelle. "Global and target analysis of time-resolved spectra." Biochimica et Biophysica Acta (BBA)-Bioenergetics 1657, no. 2 (2004): 82-104. pdf (checked)
  28. Groot, Marie Louise, Luuk JGW van Wilderen, Delmar S. Larsen, Michael A. van der Horst, Ivo HM van Stokkum, Klaas J. Hellingwerf, and Rienk van Grondelle. "Initial steps of signal generation in photoactive yellow protein revealed with femtosecond mid-infrared spectroscopy." Biochemistry 42, no. 34 (2003): 10054-10059. pdf (checked)
  29. Chosrowjan, Haik, Noboru Mataga, Nobuaki Nakashima, Yasushi Imamoto, and Fumio Tokunaga. "Femtosecond-picosecond fluorescence studies on excited state dynamics of photoactive yellow protein from Ectothiorhodospira halophila." Chemical physics letters 270, no. 3 (1997): 267-272. pdf (checked)