6.E: Prokaryotic Diversity (Exercises)
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\(\newcommand{\avec}{\mathbf a}\) \(\newcommand{\bvec}{\mathbf b}\) \(\newcommand{\cvec}{\mathbf c}\) \(\newcommand{\dvec}{\mathbf d}\) \(\newcommand{\dtil}{\widetilde{\mathbf d}}\) \(\newcommand{\evec}{\mathbf e}\) \(\newcommand{\fvec}{\mathbf f}\) \(\newcommand{\nvec}{\mathbf n}\) \(\newcommand{\pvec}{\mathbf p}\) \(\newcommand{\qvec}{\mathbf q}\) \(\newcommand{\svec}{\mathbf s}\) \(\newcommand{\tvec}{\mathbf t}\) \(\newcommand{\uvec}{\mathbf u}\) \(\newcommand{\vvec}{\mathbf v}\) \(\newcommand{\wvec}{\mathbf w}\) \(\newcommand{\xvec}{\mathbf x}\) \(\newcommand{\yvec}{\mathbf y}\) \(\newcommand{\zvec}{\mathbf z}\) \(\newcommand{\rvec}{\mathbf r}\) \(\newcommand{\mvec}{\mathbf m}\) \(\newcommand{\zerovec}{\mathbf 0}\) \(\newcommand{\onevec}{\mathbf 1}\) \(\newcommand{\real}{\mathbb R}\) \(\newcommand{\twovec}[2]{\left[\begin{array}{r}#1 \\ #2 \end{array}\right]}\) \(\newcommand{\ctwovec}[2]{\left[\begin{array}{c}#1 \\ #2 \end{array}\right]}\) \(\newcommand{\threevec}[3]{\left[\begin{array}{r}#1 \\ #2 \\ #3 \end{array}\right]}\) \(\newcommand{\cthreevec}[3]{\left[\begin{array}{c}#1 \\ #2 \\ #3 \end{array}\right]}\) \(\newcommand{\fourvec}[4]{\left[\begin{array}{r}#1 \\ #2 \\ #3 \\ #4 \end{array}\right]}\) \(\newcommand{\cfourvec}[4]{\left[\begin{array}{c}#1 \\ #2 \\ #3 \\ #4 \end{array}\right]}\) \(\newcommand{\fivevec}[5]{\left[\begin{array}{r}#1 \\ #2 \\ #3 \\ #4 \\ #5 \\ \end{array}\right]}\) \(\newcommand{\cfivevec}[5]{\left[\begin{array}{c}#1 \\ #2 \\ #3 \\ #4 \\ #5 \\ \end{array}\right]}\) \(\newcommand{\mattwo}[4]{\left[\begin{array}{rr}#1 \amp #2 \\ #3 \amp #4 \\ \end{array}\right]}\) \(\newcommand{\laspan}[1]{\text{Span}\{#1\}}\) \(\newcommand{\bcal}{\cal B}\) \(\newcommand{\ccal}{\cal C}\) \(\newcommand{\scal}{\cal S}\) \(\newcommand{\wcal}{\cal W}\) \(\newcommand{\ecal}{\cal E}\) \(\newcommand{\coords}[2]{\left\{#1\right\}_{#2}}\) \(\newcommand{\gray}[1]{\color{gray}{#1}}\) \(\newcommand{\lgray}[1]{\color{lightgray}{#1}}\) \(\newcommand{\rank}{\operatorname{rank}}\) \(\newcommand{\row}{\text{Row}}\) \(\newcommand{\col}{\text{Col}}\) \(\renewcommand{\row}{\text{Row}}\) \(\newcommand{\nul}{\text{Nul}}\) \(\newcommand{\var}{\text{Var}}\) \(\newcommand{\corr}{\text{corr}}\) \(\newcommand{\len}[1]{\left|#1\right|}\) \(\newcommand{\bbar}{\overline{\bvec}}\) \(\newcommand{\bhat}{\widehat{\bvec}}\) \(\newcommand{\bperp}{\bvec^\perp}\) \(\newcommand{\xhat}{\widehat{\xvec}}\) \(\newcommand{\vhat}{\widehat{\vvec}}\) \(\newcommand{\uhat}{\widehat{\uvec}}\) \(\newcommand{\what}{\widehat{\wvec}}\) \(\newcommand{\Sighat}{\widehat{\Sigma}}\) \(\newcommand{\lt}{<}\) \(\newcommand{\gt}{>}\) \(\newcommand{\amp}{&}\) \(\definecolor{fillinmathshade}{gray}{0.9}\)6.1: Prokaryote Habitats, Relationships, and Microbiomes
Prokaryotes are unicellular microorganisms whose cells have no nucleus. Prokaryotes can be found everywhere on our planet, even in the most extreme environments. Prokaryotes are very flexible metabolically, so they are able to adjust their feeding to the available natural resources. Prokaryotes live in communities that interact among themselves and with large organisms that they use as hosts (including humans).
Multiple Choice
The term prokaryotes refers to which of the following?
- very small organisms
- unicellular organisms that have no nucleus
- multicellular organisms
- cells that resemble animal cells more than plant cells
- Answer
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B
The term microbiota refers to which of the following?
- all microorganisms of the same species
- all of the microorganisms involved in a symbiotic relationship
- all microorganisms in a certain region of the human body
- all microorganisms in a certain geographic region
- Answer
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C
Which of the following refers to the type of interaction between two prokaryotic populations in which one population benefits and the other is not affected?
- mutualism
- commensalism
- parasitism
- neutralism
- Answer
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B
True/False
Among prokaryotes, there are some that can live in every environment on earth.
- Answer
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True
Fill in the Blank
When prokaryotes live as interacting communities in which one population benefits to the harm of the other, the type of symbiosis is called ________.
- Answer
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parasitism
The domain ________ does not include prokaryotes.
- Answer
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Eukarya
Pathogenic bacteria that are part of the transient microbiota can sometimes be eliminated by ________ therapy.
- Answer
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antibiotic
Nitrogen-fixing bacteria provide other organisms with usable nitrogen in the form of ________.
- Answer
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ammonia
Short Answer
Compare commensalism and amensalism.
Give an example of the changes of human microbiota that result from medical intervention.
6.2: Proteobacteria
Proteobacteria is a phylum of gram-negative bacteria and are classified into the classes alpha-, beta-, gamma-, delta- and epsilonproteobacteria, each class having separate orders, families, genera, and species. Alphaproteobacteria are oligotrophs. The taxa chlamydias and rickettsias are obligate intracellular pathogens, feeding on cells of host organisms; they are metabolically inactive outside of the host cell. Some Alphaproteobacteria can convert atmospheric nitrogen to nitrites.
Multiple Choice
Which of the following describes Proteobacteria in domain Bacteria?
- phylum
- class
- species
- genus
- Answer
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A
All Alphaproteobacteria are which of the following?
- oligotrophs
- intracellular
- pathogenic
- all of the above
- none of the above
- Answer
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A
Class Betaproteobacteria includes all but which of the following genera?
- Neisseria.
- Bordetella.
- Leptothrix.
- Campylobacter.
- Answer
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D
Haemophilus influenzae is a common cause of which of the following?
- influenza
- dysentery
- upper respiratory tract infections
- hemophilia
- Answer
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C
Fill in the Blank
Rickettsias are ________ intracellular bacteria.
- Answer
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obligate
The species ________, which belongs to Epsilonproteobacteria, causes peptic ulcers of the stomach and duodenum.
- Answer
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Helicobacter pylori
The genus Salmonella belongs to the class ________ and includes pathogens that cause salmonellosis and typhoid fever.
- Answer
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Gammaproteobacteria
Short Answer
What is the metabolic difference between coliforms and noncoliforms? Which category contains several species of intestinal pathogens?
Why are Mycoplasma and Chlamydia classified as obligate intracellular pathogens?
Critical Thinking
The cell shown is found in the human stomach and is now known to cause peptic ulcers. What is the name of this bacterium?
(credit: American Society for Microbiology)
6.3: Nonproteobacteria Gram-negative Bacteria and Phototrophic Bacteria
Gram-negative nonproteobacteria include the taxa spirochetes; the Cytophaga, Fusobacterium, Bacteroides group; Planctomycetes; and many representatives of phototrophic bacteria. Spirochetes are motile, spiral bacteria with a long, narrow body; they are difficult or impossible to culture. Several genera of spirochetes contain human pathogens that cause such diseases as syphilis and Lyme disease. Cytophaga, Fusobacterium, and Bacteroides are classified together as a phylum called the CFB group.
Multiple Choice
Which of the following is the organelle that spirochetes use to propel themselves?
- plasma membrane
- axial filament
- pilum
- fimbria
- Answer
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B
Which of the following bacteria are the most prevalent in the human gut?
- cyanobacteria
- staphylococci
- Borrelia
- Bacteroides
- Answer
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D
Which of the following refers to photosynthesis performed by bacteria with the use of water as the donor of electrons?
- oxygenic
- anoxygenic
- heterotrophic
- phototrophic
- Answer
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A
Fill in the Blank
The bacterium that causes syphilis is called ________.
- Answer
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Treponema pallidum pallidum
Bacteria in the genus Rhodospirillum that use hydrogen for oxidation and fix nitrogen are ________ bacteria.
- Answer
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purple nonsulfur
Short Answer
Explain the term CFB group and name the genera that this group includes.
Name and briefly describe the bacterium that causes Lyme disease.
Characterize the phylum Cyanobacteria.
6.4: Gram-positive Bacteria
Gram-positive bacteria are a very large and diverse group of microorganisms. Understanding their taxonomy and knowing their unique features is important for diagnostics and treatment of infectious diseases. Gram-positive bacteria are classified into high G+C gram-positive and low G+C gram-positive bacteria, based on the prevalence of guanine and cytosine nucleotides in their genome.
Multiple Choice
Which of the following bacterial species is classified as high G+C gram-positive?
- Corynebacterium diphtheriae
- Staphylococcus aureus
- Bacillus anthracis
- Streptococcus pneumonia
- Answer
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A
Fill in the Blank
Streptococcus is the ________ of bacteria that is responsible for many human diseases.
- Answer
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genus
One species of Streptococcus, S. pyogenes, is a classified as a ________ pathogen due to the characteristic production of pus in infections it causes.
- Answer
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pyogenic
Propionibacterium belongs to ________ G+C gram-positive bacteria. One of its species is used in the food industry and another causes acne.
- Answer
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high
Short Answer
Name and describe two types of S. aureus that show multiple antibiotic resistance.
Critical Thinking
The microscopic growth pattern shown is characteristic of which genus of bacteria?
(credit: modification of work by Janice Haney Carr/Centers for Disease Control and Prevention)