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[1] Embl allextron database - cassette exons.
[2] Batzoglou S et al. Arachne: a whole-genome shotgun assembler. Genome Res, 2002.
[3] Manolis Kellis. Lecture slides 04: Comparative genomics i. September 21,2010.
[4] Manolis Kellis. Lecture slides 05.1: Comparative genomics ii. September 23, 2010.
[5] Manolis Kellis. Lecture slides 05.2: Comparative genomics iii, evolution. September 25,2010.
[6] Nikolaus Rajewsky Kevin Chen. The evolution of gene regulation by transcription factors and micrornas. Nature Reviews Genetics, 2007.

Figure 5.28: S-LAGAN results for IGF locus.

Figure 5.29: S-LAGAN results for IGF locus.
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[7] Douglas Robinson and Lynn Cooley. Examination of the function of two kelch proteins generated by stop codon suppression. Development, 1997.

[8] Stark. Discovery of functional elements in 12 drosophila genomes using evolutionary signatures. Nature, 2007.
[9] Angela Tan. Lecture 15 notes: Comparative genomics i: Genome annotation. November 4, 2009.